How to Make Soft and Moist Pumpkin Cream Cheese Muffins

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Pumpkin muffins stuffed with cream cheese cut in half in a plate.

Why You’ll Love These Pumpkin Cream Cheese Muffins

Ingredients for Pumpkin Muffins

Ingredients to make pumpkin muffins stuffed with cream cheese.

Ingredients for Cream Cheese Stuffing

Ingredients for the cream cheese frosting.

Ingredients for Pumpkin Seeds Topping

Ingredients to make the toppings for the muffins.
Pumpkin muffins stuffed with cream cheese in a plate.

How to Make Pumpkin Seeds Topping (optional)

Pumpkin muffins stuffed with cream cheese in a plate.

Tips for Making Perfect Pumpkin Cream Cheese Muffins

Pumpkin muffins stuffed with cream cheese cut in half in a plate.

Storage Tips for Pumpkin Cream Cheese Muffins

Keeping your pumpkin cream cheese muffins fresh and delicious is easy with these simple storage tips!

Once baked and fully cooled, store the muffins in an airtight container in the refrigerator for up to 5 days.

The cream cheese filling needs to be kept chilled, so refrigeration is a must. For longer storage, you can freeze the muffins by wrapping each one individually in plastic wrap and placing them in a freezer-safe bag or container.

They’ll stay fresh in the freezer for up to 3 months! When you’re ready to enjoy, let them thaw at room temperature or warm them in the microwave for that fresh-from-the-oven taste.
Perfect for meal prepping your favorite fall treat!


Pumpkin muffins stuffed with cream cheese cut in half in a plate.

More Muffin Recipes


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Pumpkin Cream Cheese Muffins

Bursting with warm spices like cinnamon and nutmeg, these moist pumpkin muffins are made even better with a luscious cream cheese filling swirled into every bite. Perfect for breakfast, snacks, or dessert, they’re easy to make, freezer-friendly, and guaranteed to become a seasonal favorite. Whether you're hosting a cozy brunch or craving a taste of autumn, this recipe has you covered!
Prep Time 10 minutes
Cook Time 25 minutes
Cooling time 10 minutes
Course Breakfast, Dessert
Cuisine American
Servings 12 muffins

Ingredients
  

For the Pumpkin Muffins:

  • 2 cups all-purpose flour
  • tsp baking soda
  • 2 tsp baking powder
  • ½ tsp salt
  • 1 tsp ground cinnamon
  • ½ tsp ground nutmeg
  • ½ tsp ground ginger
  • 1 cup canned pumpkin puree
  • ¾ cup granulated sugar
  • ½ cup brown sugar
  • ½ cup vegetable oil
  • cup milk
  • 3 eggs room temperature
  • 1 tsp vanilla extract

For the Cream Cheese Filling:

  • 1 cream cheese package
  • ½ cup powdered sugar
  • 1 tsp vanilla extract

Topping (optional)

  • 1 tbsp butter unsalted
  • ½ cup pumpkin seeds natural or salted for that salty and sweet combo
  • 2 tbsp brown sugar
  • ¼ tsp cinnamon

Instructions
 

Topping Preparation

  • In a pan, melt the butter and add the brown sugar, cinnamon and pumpkin seeds
  • Toss frequently for 5 minutes and transfer to a sheet pan so that the pumpkin seeds mixture can fully cool
  • Once the mixture is room temperature, gently grind the seeds to break them off while still having them in chunks

Prepare the Cream Cheese Filling:

  • In a small bowl, beat the cream cheese, powdered sugar, and vanilla extract until smooth.
  • Transfer the mixture to a piping bag or plastic zip-top bag and refrigerate until ready to use.

Make the Muffin Batter:

  • Preheat the oven to 375°F (190°C) and line a 12-cup muffin tin with liners.
  • In a medium bowl, whisk together the flour, baking soda, baking powder, salt, cinnamon, nutmeg, and ginger.
  • In a large bowl, mix the pumpkin puree, granulated sugar, brown sugar, oil, milk, eggs, and vanilla until well combined.
  • Gradually add the dry ingredients to the wet ingredients, mixing until just combined.

Assemble the Muffins:

  • Fill each muffin liner about ¾ full with the batter.
  • Pipe or spoon about 1 teaspoon of the cream cheese mixture into the center of each muffin.

Bake:

  • Bake for 5 minutes at 375°F and 18–20 minutes at 350°F, or until a toothpick inserted into the muffin (avoiding the cream cheese) comes out clean.
  • Let the muffins cool in the pan for 5 minutes before transferring them to a wire rack to cool completely.

Notes

Storage Tips for Pumpkin Cream Cheese Muffins

Once baked and fully cooled, store the muffins in an airtight container in the refrigerator for up to 5 days.
The cream cheese filling needs to be kept chilled, so refrigeration is a must. For longer storage, you can freeze the muffins by wrapping each one individually in plastic wrap and placing them in a freezer-safe bag or container.
They’ll stay fresh in the freezer for up to 3 months! When you’re ready to enjoy, let them thaw at room temperature or warm them in the microwave for that fresh-from-the-oven taste.
Keyword autumn, autumn recipe, cinnamon, Comfort Food, dessert from scratch, easy dessert idea, easy recipe, fall dessert, fall recipe, fall spices, home party recipe, kid friendly dessert, kid friendly snack, nutmeg, pumpkin

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I’m Cath!

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Welcome to my corner of the internet where I share my favorite food recipe. Food lover at heart I love cooking and food photography hence the combination of both creating this fun blog!
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